SNP Report
Name | rs3851228   dbSNP |
---|---|
Location | chr:6,111848191 |
Allele | A/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs13196377 | 0.83[GIH][hapmap] |
rs13208890 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1407644 | 0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs17090837 | 0.88[MEX][hapmap];0.84[TSI][hapmap] |
rs17539176 | 0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap] |
rs2179070 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs34863440 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35388905 | 0.81[EUR][1000 genomes] |
rs35931461 | 1.00[EUR][1000 genomes] |
rs36007392 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs458017 | 0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap] |
rs459888 | 0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap] |
rs479343 | 1.00[CEU][hapmap] |
rs6919235 | 0.80[YRI][hapmap] |
rs6925373 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6932122 | 0.83[AFR][1000 genomes] |
rs6939657 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71562294 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs71562296 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7741847 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7742244 | 0.85[YRI][hapmap] |
rs7742724 | 0.84[YRI][hapmap] |
rs7743755 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7750803 | 0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap] |
rs7758483 | 0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap] |
rs9387010 | 0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap] |
Symbol | Regulation type |
---|---|
REV3L | Distal transcriptional regulation |
TRAF3IP2-AS1 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
FLYWCH2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014