SNP Report

Basic Infomation

Name	rs3851228 dbSNP
Location	chr:6,111848191
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13196377	0.83[GIH][hapmap]
rs13208890	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1407644	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17090837	0.88[MEX][hapmap];0.84[TSI][hapmap]
rs17539176	0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs2179070	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34863440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35388905	0.81[EUR][1000 genomes]
rs35931461	1.00[EUR][1000 genomes]
rs36007392	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs458017	0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs459888	0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs479343	1.00[CEU][hapmap]
rs6919235	0.80[YRI][hapmap]
rs6925373	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6932122	0.83[AFR][1000 genomes]
rs6939657	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71562294	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71562296	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741847	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7742244	0.85[YRI][hapmap]
rs7742724	0.84[YRI][hapmap]
rs7743755	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7750803	0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs7758483	0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs9387010	0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
REV3L	Distal transcriptional regulation
TRAF3IP2-AS1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)