SNP Report
Name | rs3789599   dbSNP |
---|---|
Location | chr:1,114323318 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10127930 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs10489936 | 0.83[CEU][hapmap];1.00[CHB][hapmap] |
rs1080307 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap] |
rs1217384 | 0.94[CHD][hapmap];0.93[GIH][hapmap];0.90[MEX][hapmap] |
rs12730735 | 0.81[ASN][1000 genomes] |
rs12734625 | 0.81[ASN][1000 genomes] |
rs12735104 | 0.86[ASN][1000 genomes] |
rs12748727 | 0.81[ASN][1000 genomes] |
rs12752932 | 0.81[ASN][1000 genomes] |
rs12760457 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes] |
rs13374352 | 0.81[ASN][1000 genomes] |
rs17274634 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap] |
rs17462614 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17509390 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs1885454 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap] |
rs2040040 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2359173 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap] |
rs2359174 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap] |
rs34042871 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs34341173 | 0.80[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs34649199 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs36115604 | 0.81[ASN][1000 genomes] |
rs3747998 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap] |
rs3748003 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap] |
rs3761931 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap] |
rs3789607 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes] |
rs3789609 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap] |
rs61817586 | 0.81[ASN][1000 genomes] |
rs61817617 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs6668829 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs6674848 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes] |
rs6703387 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs7533605 | 0.81[ASN][1000 genomes] |
rs7555354 | 0.81[ASN][1000 genomes] |
rs9803891 | 0.83[CEU][hapmap] |
Symbol | Regulation type |
---|---|
RSBN1 | Distal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
PHTF1 | Distal transcriptional regulation |
RSBN1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014