SNP Report
Name | rs3752953   dbSNP |
---|---|
Location | chr:1,114242250 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10489936 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
rs1080307 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes] |
rs1217384 | 0.91[CEU][hapmap] |
rs12734625 | 0.82[EUR][1000 genomes] |
rs12752932 | 0.82[EUR][1000 genomes] |
rs12758546 | 0.84[EUR][1000 genomes] |
rs12760457 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
rs13374352 | 0.81[EUR][1000 genomes] |
rs17274550 | 0.84[EUR][1000 genomes] |
rs17274620 | 0.84[EUR][1000 genomes] |
rs17274634 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
rs17359302 | 0.84[EUR][1000 genomes] |
rs1885454 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
rs2040040 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
rs2359173 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
rs2359174 | 0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
rs34258372 | 0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap] |
rs3747998 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[EUR][1000 genomes] |
rs3748003 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
rs3761931 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap] |
rs3789595 | 0.84[EUR][1000 genomes] |
rs3789607 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
rs3789609 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
rs61817586 | 0.82[EUR][1000 genomes] |
rs61820162 | 0.83[EUR][1000 genomes] |
rs6668829 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs6674848 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes] |
rs6703387 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
rs9803891 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
Symbol | Regulation type |
---|---|
PHTF1 | Distal transcriptional regulation |
ENSG00000232450 | RNA binding protein mediated regulation |
PHTF1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014