SNP Report
Basic Infomation
| Name | rs3752953 dbSNP |
|---|---|
| Location | chr:1,114242250 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10489936 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
| rs1080307 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1217384 | 0.91[CEU][hapmap] |
| rs12734625 | 0.82[EUR][1000 genomes] |
| rs12752932 | 0.82[EUR][1000 genomes] |
| rs12758546 | 0.84[EUR][1000 genomes] |
| rs12760457 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
| rs13374352 | 0.81[EUR][1000 genomes] |
| rs17274550 | 0.84[EUR][1000 genomes] |
| rs17274620 | 0.84[EUR][1000 genomes] |
| rs17274634 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs17359302 | 0.84[EUR][1000 genomes] |
| rs1885454 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2040040 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
| rs2359173 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2359174 | 0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs34258372 | 0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap] |
| rs3747998 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[EUR][1000 genomes] |
| rs3748003 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs3761931 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap] |
| rs3789595 | 0.84[EUR][1000 genomes] |
| rs3789607 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
| rs3789609 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
| rs61817586 | 0.82[EUR][1000 genomes] |
| rs61820162 | 0.83[EUR][1000 genomes] |
| rs6668829 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs6674848 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs6703387 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
| rs9803891 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PHTF1 | Distal transcriptional regulation |
| ENSG00000232450 | RNA binding protein mediated regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014