SNP Report
Basic Infomation
| Name | rs35675666 dbSNP |
|---|---|
| Location | chr:1,8021973 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10489450 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12563704 | 0.84[EUR][1000 genomes] |
| rs12727642 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12735338 | 0.85[ASN][1000 genomes] |
| rs12736494 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12740409 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12745223 | 0.85[ASN][1000 genomes] |
| rs12750531 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs161800 | 0.87[EUR][1000 genomes] |
| rs161802 | 0.93[CEU][hapmap];0.95[GIH][hapmap];0.86[EUR][1000 genomes] |
| rs161815 | 0.97[ASN][1000 genomes] |
| rs17229081 | 0.82[EUR][1000 genomes] |
| rs17523802 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1883679 | 0.93[CEU][hapmap] |
| rs225120 | 0.87[EUR][1000 genomes] |
| rs226474 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2294889 | 0.82[ASN][1000 genomes] |
| rs2493214 | 0.86[CEU][hapmap] |
| rs2641116 | 0.91[EUR][1000 genomes] |
| rs28624 | 0.93[CEU][hapmap];0.94[GIH][hapmap] |
| rs34124834 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs34157438 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34878017 | 0.94[EUR][1000 genomes] |
| rs35731977 | 0.91[EUR][1000 genomes] |
| rs36016881 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs367481 | 0.83[EUR][1000 genomes] |
| rs3766606 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs397349 | 0.93[CEU][hapmap];0.95[GIH][hapmap] |
| rs4908724 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap] |
| rs4908727 | 0.80[CEU][hapmap] |
| rs60094536 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6577459 | 0.86[CEU][hapmap];1.00[CHB][hapmap] |
| rs67717282 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7517357 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7545687 | 0.87[EUR][1000 genomes] |
| rs9658012 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PARK7 | Proximal transcriptional regulation |
| BCOR | Distal transcriptional regulation |
| FOXJ3 | Distal transcriptional regulation |
| PER3 | Distal transcriptional regulation |
| TNFRSF9 | Distal transcriptional regulation |
| ENSG00000200344 | Distal transcriptional regulation |
| RERE | Distal transcriptional regulation |
| VAMP3 | Distal transcriptional regulation |
| PARK7 | Distal transcriptional regulation |
| ENO1 | Distal transcriptional regulation |
| NCAPD3 | Distal transcriptional regulation |
| VPS26B | Distal transcriptional regulation |
| POC1B | Distal transcriptional regulation |
| POC1B-GALNT4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014