SNP Report
Basic Infomation
| Name | rs34823376 dbSNP |
|---|---|
| Location | chr:1,8109836 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10489450 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12563704 | 0.81[EUR][1000 genomes] |
| rs12727642 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12735338 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12736494 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12745223 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12750531 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs161800 | 0.83[EUR][1000 genomes] |
| rs161802 | 0.81[EUR][1000 genomes] |
| rs1883679 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs225120 | 0.83[EUR][1000 genomes] |
| rs2294889 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28624 | 0.92[EUR][1000 genomes] |
| rs36016881 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs397349 | 0.92[EUR][1000 genomes] |
| rs404381 | 0.89[EUR][1000 genomes] |
| rs419390 | 0.92[EUR][1000 genomes] |
| rs441467 | 0.90[EUR][1000 genomes] |
| rs441597 | 0.94[EUR][1000 genomes] |
| rs4908724 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60094536 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6577459 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs67717282 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERRFI1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014