SNP Report
Basic Infomation
| Name | rs34044417 dbSNP |
|---|---|
| Location | chr:10,81683991 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12768733 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12770651 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12770776 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12776624 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12778441 | 1.00[ASN][1000 genomes] |
| rs12784549 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17879583 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17882021 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17882375 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17885211 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17886393 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2341955 | 1.00[ASN][1000 genomes] |
| rs34126718 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34127781 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34152673 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34165190 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34230583 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34444972 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34671741 | 1.00[ASN][1000 genomes] |
| rs34688454 | 1.00[ASN][1000 genomes] |
| rs35107087 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35288576 | 1.00[ASN][1000 genomes] |
| rs35318914 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35400352 | 1.00[ASN][1000 genomes] |
| rs35489691 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35861966 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41290630 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41314475 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs45550832 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs45614540 | 1.00[ASN][1000 genomes] |
| rs71209732 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481535 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481536 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481538 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481539 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481540 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481541 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481543 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71481544 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs878795 | 1.00[ASN][1000 genomes] |
| rs9664198 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MBL1P | Distal transcriptional regulation |
| MBL1P | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014