SNP Report
Name | rs3197999   dbSNP |
---|---|
Location | chr:3,49721532 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1050088 | 0.86[JPT][hapmap] |
rs1060962 | 0.92[CHD][hapmap];0.83[GIH][hapmap] |
rs11130199 | 0.86[JPT][hapmap] |
rs11130212 | 0.92[ASN][1000 genomes] |
rs11130213 | 0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1131095 | 0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11709525 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11710037 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11718165 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11720264 | 0.86[JPT][hapmap] |
rs11720597 | 0.80[AMR][1000 genomes] |
rs11917431 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11919311 | 0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs11921590 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12489092 | 0.86[JPT][hapmap] |
rs13064576 | 0.81[AMR][1000 genomes] |
rs13085791 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13316695 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1352890 | 0.86[ASN][1000 genomes] |
rs1801143 | 0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap] |
rs1826347 | 0.86[JPT][hapmap] |
rs1873625 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs1873626 | 1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2131104 | 0.92[CHD][hapmap];0.83[GIH][hapmap] |
rs2131109 | 0.92[CHD][hapmap];0.83[GIH][hapmap] |
rs2172252 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2329020 | 0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2960548 | 0.92[ASN][1000 genomes] |
rs34762726 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs35007338 | 0.87[ASN][1000 genomes] |
rs35404120 | 0.87[ASN][1000 genomes] |
rs3811697 | 0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap] |
rs3870338 | 0.86[JPT][hapmap] |
rs3924462 | 0.86[JPT][hapmap] |
rs4283605 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4625 | 0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap] |
rs4855847 | 0.87[ASN][1000 genomes] |
rs4855852 | 0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs4855859 | 0.86[JPT][hapmap] |
rs4855864 | 0.86[JPT][hapmap] |
rs4855881 | 0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs4855883 | 0.81[ASN][1000 genomes] |
rs4855884 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap] |
rs6766131 | 0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap] |
rs6770670 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6803222 | 0.85[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7614725 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7622302 | 0.83[ASW][hapmap];0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap] |
rs7633271 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
rs7637999 | 0.86[JPT][hapmap] |
rs9811982 | 0.95[CEU][hapmap] |
rs9812791 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9822268 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9823546 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9824092 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9827708 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9833611 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9836291 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9837027 | 0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap] |
rs9837341 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9837520 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9858213 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap] |
rs9858280 | 0.95[CEU][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap] |
rs9858542 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9862080 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9875617 | 0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes] |
rs9882740 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MST1 | Distal transcriptional regulation |
APEH | Distal transcriptional regulation |
MST1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014