SNP Report
Basic Infomation
| Name | rs3019616 dbSNP |
|---|---|
| Location | chr:11,61842947 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs259868 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2611758 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2611766 | 1.00[AMR][1000 genomes] |
| rs2611767 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2668896 | 1.00[AMR][1000 genomes] |
| rs2926518 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3133500 | 1.00[AMR][1000 genomes] |
| rs368878 | 1.00[AMR][1000 genomes] |
| rs371297 | 1.00[AMR][1000 genomes] |
| rs380361 | 1.00[AMR][1000 genomes] |
| rs390070 | 0.89[YRI][hapmap] |
| rs3972399 | 0.88[YRI][hapmap] |
| rs397294 | 1.00[AMR][1000 genomes] |
| rs399147 | 1.00[AFR][1000 genomes] |
| rs401726 | 1.00[AMR][1000 genomes] |
| rs410136 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs412422 | 1.00[AMR][1000 genomes] |
| rs413484 | 1.00[AMR][1000 genomes] |
| rs415627 | 1.00[AMR][1000 genomes] |
| rs426843 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs437059 | 1.00[AMR][1000 genomes] |
| rs437600 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs450709 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7949588 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000254424 | Proximal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| ENSG00000255553 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014