SNP Report
Basic Infomation
| Name | rs3018735 dbSNP |
|---|---|
| Location | chr:11,61210445 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792313 | 0.90[AFR][1000 genomes] |
| rs10792314 | 0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11230694 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12791961 | 0.87[AFR][1000 genomes] |
| rs1377456 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1377457 | 0.81[AFR][1000 genomes] |
| rs17702 | 0.87[EUR][1000 genomes] |
| rs2860196 | 0.85[EUR][1000 genomes] |
| rs2860519 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2924435 | 0.87[EUR][1000 genomes] |
| rs2924441 | 0.88[EUR][1000 genomes] |
| rs2943805 | 0.97[EUR][1000 genomes] |
| rs2943806 | 0.85[EUR][1000 genomes] |
| rs2943807 | 0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs3017602 | 0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3018726 | 0.85[EUR][1000 genomes] |
| rs3018727 | 0.83[EUR][1000 genomes] |
| rs3019186 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs3019189 | 0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3019198 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3019199 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3741265 | 0.83[EUR][1000 genomes] |
| rs3809083 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6591654 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs720888 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7607 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7933882 | 0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7934229 | 0.87[EUR][1000 genomes] |
| rs7945840 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs879647 | 0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs896831 | 0.85[EUR][1000 genomes] |
| rs896832 | 0.85[EUR][1000 genomes] |
| rs921635 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000240823 | Proximal transcriptional regulation |
| TMEM216 | Distal transcriptional regulation |
| ENSG00000256591 | RNA binding protein mediated regulation |
| SDHAF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014