SNP Report
Name | rs2930047   dbSNP |
---|---|
Location | chr:5,10695526 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs267930 | 0.83[EUR][1000 genomes] |
rs267931 | 0.85[EUR][1000 genomes] |
rs267939 | 0.81[ASW][hapmap];0.88[CEU][hapmap];0.82[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes] |
rs267941 | 0.95[YRI][hapmap] |
rs267953 | 0.89[EUR][1000 genomes] |
rs267963 | 0.82[AMR][1000 genomes] |
rs267972 | 0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs267973 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.82[GIH][hapmap];0.96[LWK][hapmap];0.83[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs267975 | 0.82[AMR][1000 genomes] |
rs267978 | 0.88[CEU][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs267980 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs267982 | 0.83[AMR][1000 genomes] |
rs267984 | 0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs267985 | 0.88[ASW][hapmap];0.88[CEU][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2918392 | 0.84[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2918398 | 0.96[CEU][hapmap];0.87[MEX][hapmap];0.81[EUR][1000 genomes] |
rs2930048 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs364491 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs3776414 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3822411 | 0.82[EUR][1000 genomes] |
rs3822412 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs5745264 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs5745271 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6870539 | 0.88[CEU][hapmap];0.88[EUR][1000 genomes] |
rs6881964 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7715399 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7733385 | 0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs900535 | 0.88[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9312742 | 0.88[CEU][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
DAP | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014