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rVarBase
SNP Report
Basic Infomation
Name
rs2868299  
dbSNP
Location
chr:20,44112820
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2143219
0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2143221
0.81[CHB][hapmap]
rs2179446
0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2179447
0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2868300
0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000237464
Proximal transcriptional regulation
SPINT3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
eQTL related gene
Source
TWSG1
SCAN
STK4
SCAN
DNTTIP1
SCAN
CTSA
SCAN
ACOT8
SCAN
L3MBTL1
SCAN
GTSF1L
SCAN
CDH22
SCAN