SNP Report
Basic Infomation
| Name | rs28646202 dbSNP |
|---|---|
| Location | chr:10,81887949 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11201844 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201845 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12770776 | 1.00[ASN][1000 genomes] |
| rs12778441 | 1.00[ASN][1000 genomes] |
| rs28410600 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28479156 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34671741 | 1.00[ASN][1000 genomes] |
| rs34688454 | 1.00[ASN][1000 genomes] |
| rs35288576 | 1.00[ASN][1000 genomes] |
| rs35400352 | 1.00[ASN][1000 genomes] |
| rs3851051 | 1.00[ASN][1000 genomes] |
| rs3851052 | 1.00[ASN][1000 genomes] |
| rs4083867 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41298233 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41317272 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7070596 | 1.00[ASN][1000 genomes] |
| rs7071174 | 1.00[ASN][1000 genomes] |
| rs7076803 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7077086 | 1.00[ASN][1000 genomes] |
| rs7090424 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7094717 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7096892 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72808031 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72808033 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72808035 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72809517 | 1.00[ASN][1000 genomes] |
| rs9664198 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAC9 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014