SNP Report
Basic Infomation
| Name | rs28502009 dbSNP |
|---|---|
| Location | chr:16,11426541 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 61)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10163410 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11649073 | 0.93[ASN][1000 genomes] |
| rs12051532 | 0.80[ASN][1000 genomes] |
| rs12162021 | 0.87[ASN][1000 genomes] |
| rs12596260 | 0.87[ASN][1000 genomes] |
| rs12598646 | 0.87[ASN][1000 genomes] |
| rs12599908 | 0.87[ASN][1000 genomes] |
| rs12708722 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12917839 | 0.87[ASN][1000 genomes] |
| rs12918017 | 0.87[ASN][1000 genomes] |
| rs12921562 | 0.80[ASN][1000 genomes] |
| rs12922090 | 0.87[ASN][1000 genomes] |
| rs12922409 | 0.87[ASN][1000 genomes] |
| rs12922733 | 0.80[ASN][1000 genomes] |
| rs12924957 | 0.87[ASN][1000 genomes] |
| rs12925649 | 0.80[ASN][1000 genomes] |
| rs12927773 | 0.87[ASN][1000 genomes] |
| rs12928822 | 0.87[ASN][1000 genomes] |
| rs12928968 | 0.90[ASN][1000 genomes] |
| rs12935137 | 0.90[ASN][1000 genomes] |
| rs13332454 | 0.81[ASN][1000 genomes] |
| rs13334203 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1345880 | 0.87[ASN][1000 genomes] |
| rs1559393 | 0.80[ASN][1000 genomes] |
| rs1646025 | 0.80[ASN][1000 genomes] |
| rs1690500 | 0.80[ASN][1000 genomes] |
| rs1794019 | 0.80[ASN][1000 genomes] |
| rs1794024 | 0.80[ASN][1000 genomes] |
| rs1794025 | 0.80[ASN][1000 genomes] |
| rs2216763 | 0.87[ASN][1000 genomes] |
| rs243315 | 0.80[ASN][1000 genomes] |
| rs2867937 | 0.87[ASN][1000 genomes] |
| rs34294744 | 0.87[ASN][1000 genomes] |
| rs34437200 | 0.87[ASN][1000 genomes] |
| rs34787601 | 0.87[ASN][1000 genomes] |
| rs34832141 | 0.87[ASN][1000 genomes] |
| rs34947566 | 0.87[ASN][1000 genomes] |
| rs35307035 | 0.87[ASN][1000 genomes] |
| rs35342456 | 0.81[ASN][1000 genomes] |
| rs3931016 | 0.81[ASN][1000 genomes] |
| rs405500 | 0.80[ASN][1000 genomes] |
| rs412861 | 0.80[ASN][1000 genomes] |
| rs4238604 | 0.90[ASN][1000 genomes] |
| rs425537 | 0.80[ASN][1000 genomes] |
| rs430966 | 0.80[ASN][1000 genomes] |
| rs497184 | 0.80[ASN][1000 genomes] |
| rs55752638 | 0.87[ASN][1000 genomes] |
| rs60409583 | 0.87[ASN][1000 genomes] |
| rs62023605 | 0.80[ASN][1000 genomes] |
| rs62023624 | 0.87[ASN][1000 genomes] |
| rs6498184 | 0.93[ASN][1000 genomes] |
| rs66718203 | 0.97[ASN][1000 genomes] |
| rs7184969 | 0.87[ASN][1000 genomes] |
| rs7191700 | 0.88[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7203508 | 1.00[ASN][1000 genomes] |
| rs72773819 | 0.87[ASN][1000 genomes] |
| rs8044747 | 0.81[ASN][1000 genomes] |
| rs8050084 | 0.90[ASN][1000 genomes] |
| rs9932855 | 0.87[ASN][1000 genomes] |
| rs9936405 | 0.90[ASN][1000 genomes] |
| rs9939877 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOCS1 | Distal transcriptional regulation |
| ENSG00000263080 | Distal transcriptional regulation |
| RMI2 | Distal transcriptional regulation |
| ENSG00000238409 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014