SNP Report
Basic Infomation
| Name | rs2701539 dbSNP |
|---|---|
| Location | chr:11,63963378 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11549691 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1544538 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17851033 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1938817 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2070232 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2154984 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2186571 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2245837 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2622420 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2622422 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2622424 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2622428 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2622430 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2701530 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2701536 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2701537 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs28395880 | 0.84[AMR][1000 genomes] |
| rs4980506 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs583799 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs59250939 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs599549 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs615924 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs616652 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs639406 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs688241 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STIP1 | Proximal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014