SNP Report
Basic Infomation
| Name | rs2694898 dbSNP |
|---|---|
| Location | chr:20,45236854 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10470024 | 1.00[EUR][1000 genomes] |
| rs12329627 | 1.00[EUR][1000 genomes] |
| rs2694883 | 0.82[ASW][hapmap];0.82[LWK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2694895 | 0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2745734 | 1.00[EUR][1000 genomes] |
| rs2745738 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs388206 | 1.00[EUR][1000 genomes] |
| rs396739 | 1.00[EUR][1000 genomes] |
| rs399017 | 1.00[EUR][1000 genomes] |
| rs56731475 | 1.00[EUR][1000 genomes] |
| rs56907245 | 1.00[EUR][1000 genomes] |
| rs57264121 | 1.00[EUR][1000 genomes] |
| rs57382021 | 1.00[EUR][1000 genomes] |
| rs57560533 | 1.00[EUR][1000 genomes] |
| rs6017826 | 1.00[EUR][1000 genomes] |
| rs6017828 | 1.00[EUR][1000 genomes] |
| rs60646624 | 1.00[EUR][1000 genomes] |
| rs6090491 | 1.00[EUR][1000 genomes] |
| rs6094307 | 1.00[EUR][1000 genomes] |
| rs6094308 | 1.00[EUR][1000 genomes] |
| rs6094309 | 1.00[EUR][1000 genomes] |
| rs6094320 | 1.00[EUR][1000 genomes] |
| rs6094321 | 1.00[EUR][1000 genomes] |
| rs6094322 | 1.00[EUR][1000 genomes] |
| rs6094325 | 1.00[EUR][1000 genomes] |
| rs6094333 | 1.00[EUR][1000 genomes] |
| rs6094334 | 1.00[EUR][1000 genomes] |
| rs6094335 | 1.00[EUR][1000 genomes] |
| rs6094468 | 1.00[EUR][1000 genomes] |
| rs73911409 | 1.00[EUR][1000 genomes] |
| rs73911422 | 1.00[EUR][1000 genomes] |
| rs73911424 | 1.00[EUR][1000 genomes] |
| rs73911425 | 1.00[EUR][1000 genomes] |
| rs73911426 | 1.00[EUR][1000 genomes] |
| rs73911427 | 1.00[EUR][1000 genomes] |
| rs73911428 | 1.00[EUR][1000 genomes] |
| rs73911429 | 1.00[EUR][1000 genomes] |
| rs8126237 | 1.00[EUR][1000 genomes] |
| rs864692 | 0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC13A3 | Distal transcriptional regulation |
| SLC13A3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014