SNP Report
Basic Infomation
| Name | rs2508711 dbSNP |
|---|---|
| Location | chr:11,65243684 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227204 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1616810 | 0.81[ASN][1000 genomes] |
| rs1621277 | 0.85[ASN][1000 genomes] |
| rs1626021 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1784100 | 0.89[ASN][1000 genomes] |
| rs1784101 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1784858 | 0.86[ASN][1000 genomes] |
| rs1784859 | 0.86[ASN][1000 genomes] |
| rs1784860 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2105608 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2508712 | 0.88[ASN][1000 genomes] |
| rs2846861 | 0.86[ASN][1000 genomes] |
| rs2957268 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2957269 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3015965 | 0.83[ASN][1000 genomes] |
| rs3015966 | 0.83[ASN][1000 genomes] |
| rs3016343 | 0.89[ASN][1000 genomes] |
| rs3132743 | 0.83[ASN][1000 genomes] |
| rs3132767 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs587080 | 0.87[ASN][1000 genomes] |
| rs587390 | 0.87[ASN][1000 genomes] |
| rs588298 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs602838 | 0.89[ASN][1000 genomes] |
| rs604676 | 0.89[ASN][1000 genomes] |
| rs605035 | 0.81[ASN][1000 genomes] |
| rs660588 | 0.92[ASN][1000 genomes] |
| rs661403 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs682845 | 0.89[ASN][1000 genomes] |
| rs7114809 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7934628 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LTBP3 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| FIBP | Distal transcriptional regulation |
| CCDC85B | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| SLC25A45 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| MIR612 | Distal transcriptional regulation |
| FOSL1 | Distal transcriptional regulation |
| BMP7 | Distal transcriptional regulation |
| ENSG00000226308 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014