SNP Report
Basic Infomation
| Name | rs2501716 dbSNP |
|---|---|
| Location | chr:6,90892399 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10455169 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10806424 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12196044 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12209546 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs206916 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.92[ASN][1000 genomes] |
| rs2474618 | 1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs2474619 | 0.81[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs2501720 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4706358 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4706361 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4707605 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7381977 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9344994 | 0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CELSR3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014