SNP Report
Basic Infomation
| Name | rs2474616 dbSNP |
|---|---|
| Location | chr:6,90856268 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1884573 | 1.00[EUR][1000 genomes] |
| rs1884574 | 1.00[EUR][1000 genomes] |
| rs2474614 | 1.00[EUR][1000 genomes] |
| rs2474615 | 1.00[EUR][1000 genomes] |
| rs2501713 | 1.00[EUR][1000 genomes] |
| rs2501715 | 1.00[EUR][1000 genomes] |
| rs285643 | 1.00[EUR][1000 genomes] |
| rs285645 | 1.00[EUR][1000 genomes] |
| rs2983374 | 1.00[EUR][1000 genomes] |
| rs58282815 | 1.00[EUR][1000 genomes] |
| rs58936258 | 1.00[AMR][1000 genomes] |
| rs606745 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs629485 | 1.00[EUR][1000 genomes] |
| rs680672 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73509380 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| HCG27 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014