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rVarBase
SNP Report
Basic Infomation
Name
rs2472649  
dbSNP
Location
chr:4,74857708
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11729931
0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12505025
0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12512838
0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13118512
0.86[EUR][1000 genomes]
rs13136948
0.83[CEU][hapmap]
rs1435521
0.83[CEU][hapmap]
rs2115693
0.85[EUR][1000 genomes]
rs4694655
1.00[ASW][hapmap];0.83[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
PPBP
Proximal transcriptional regulation
PF4
Distal transcriptional regulation
PPBP
Distal transcriptional regulation
CXCL5
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
GC
SCAN
CXCL5
SCAN