SNP Report
Basic Infomation
| Name | rs2298217 dbSNP |
|---|---|
| Location | chr:1,1064979 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10907182 | 0.81[CHD][hapmap] |
| rs11586617 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs11587937 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs12567697 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs12723165 | 0.84[AFR][1000 genomes] |
| rs12726255 | 0.87[MEX][hapmap] |
| rs12726341 | 0.82[AMR][1000 genomes] |
| rs12736814 | 0.84[AMR][1000 genomes] |
| rs12748370 | 0.84[AMR][1000 genomes] |
| rs12757754 | 1.00[ASW][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs17160824 | 1.00[ASW][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];0.89[YRI][hapmap] |
| rs17160826 | 0.82[AMR][1000 genomes] |
| rs2298216 | 0.96[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34381538 | 0.84[AMR][1000 genomes] |
| rs34658689 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs34808604 | 0.82[AMR][1000 genomes] |
| rs34820586 | 0.84[AFR][1000 genomes] |
| rs34895099 | 0.82[AMR][1000 genomes] |
| rs35300397 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs35704567 | 0.82[AMR][1000 genomes] |
| rs35823915 | 0.82[AMR][1000 genomes] |
| rs4970405 | 0.80[MEX][hapmap] |
| rs4970407 | 0.84[AFR][1000 genomes] |
| rs4970409 | 1.00[ASW][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs6604968 | 0.87[MEX][hapmap] |
| rs6671356 | 0.87[MEX][hapmap] |
| rs6682475 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs71628940 | 0.82[AMR][1000 genomes] |
| rs7545801 | 0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223823 | Distal transcriptional regulation |
| TNFRSF4 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| KRTAP4-2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014