SNP Report
Basic Infomation
| Name | rs2295111 dbSNP |
|---|---|
| Location | chr:14,68236522 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1044126 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1117516 | 0.82[ASW][hapmap];0.82[MEX][hapmap];0.83[YRI][hapmap] |
| rs11629160 | 0.83[YRI][hapmap] |
| rs11849521 | 0.83[YRI][hapmap] |
| rs11849620 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12879105 | 0.87[EUR][1000 genomes] |
| rs17782603 | 0.82[MEX][hapmap];0.83[YRI][hapmap] |
| rs1955468 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3759763 | 0.91[ASW][hapmap];0.81[MEX][hapmap];0.83[YRI][hapmap] |
| rs56233923 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56412443 | 0.85[AMR][1000 genomes] |
| rs7149133 | 0.87[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs742866 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs742869 | 0.91[ASW][hapmap];0.82[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFYVE26 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014