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rVarBase
SNP Report
Basic Infomation
Name
rs2285883  
dbSNP
Location
chr:14,69043970
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10148414
0.82[ASN][1000 genomes]
rs17105872
0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902603
0.82[ASN][1000 genomes]
rs55987972
1.00[ASN][1000 genomes]
rs7146456
0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ZFP36L1
Distal transcriptional regulation
RAD51B
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
NUDT22
SCAN
FUT8
SCAN
C14orf50
SCAN
SRSF5
SCAN
SNORD56B
SCAN