SNP Report
Basic Infomation
| Name | rs2267865 dbSNP |
|---|---|
| Location | chr:20,43956973 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2072790 | 0.90[EUR][1000 genomes] |
| rs2072791 | 0.89[EUR][1000 genomes] |
| rs2235225 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2267866 | 0.90[EUR][1000 genomes] |
| rs2267868 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2425696 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4812891 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6032127 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6065805 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6065806 | 0.89[EUR][1000 genomes] |
| rs6065807 | 0.90[EUR][1000 genomes] |
| rs6073714 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6073715 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6073717 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6073718 | 0.90[EUR][1000 genomes] |
| rs6094129 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6094130 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6104120 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6104121 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6104122 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6124699 | 0.90[EUR][1000 genomes] |
| rs6130811 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC3 | Distal transcriptional regulation |
| SDC4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014