SNP Report
Basic Infomation
| Name | rs2240050 dbSNP |
|---|---|
| Location | chr:17,5390151 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11651071 | 0.85[ASN][1000 genomes] |
| rs11651126 | 0.83[ASN][1000 genomes] |
| rs11871803 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16954727 | 1.00[CEU][hapmap];0.85[AFR][1000 genomes] |
| rs1805446 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1805460 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1805464 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1805468 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs3026150 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs59166166 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72827608 | 0.92[ASN][1000 genomes] |
| rs72827614 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DERL2 | Proximal transcriptional regulation |
| MIS12 | Proximal transcriptional regulation |
| DHX33 | Distal transcriptional regulation |
| ENSG00000262099 | Distal transcriptional regulation |
| SFN | Distal transcriptional regulation |
| WDR47 | Distal transcriptional regulation |
| MGST1 | Distal transcriptional regulation |
| FOS | Distal transcriptional regulation |
| OIP5-AS1 | Distal transcriptional regulation |
| TK2 | Distal transcriptional regulation |
| ENSG00000223154 | Distal transcriptional regulation |
| UFD1L | Distal transcriptional regulation |
| CDC45 | Distal transcriptional regulation |
| FYCO1 | Distal transcriptional regulation |
| USP46 | Distal transcriptional regulation |
| USP46-AS1 | Distal transcriptional regulation |
| G3BP1 | Distal transcriptional regulation |
| NBR1 | Distal transcriptional regulation |
| ENSG00000265692 | Distal transcriptional regulation |
| NLRP1 | Distal transcriptional regulation |
| NUP88 | Distal transcriptional regulation |
| RPAIN | Distal transcriptional regulation |
| DERL2 | Distal transcriptional regulation |
| MIS12 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014