SNP Report
Basic Infomation
| Name | rs2234506 dbSNP |
|---|---|
| Location | chr:14,68141712 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10135963 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10136738 | 0.97[AFR][1000 genomes] |
| rs10139064 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10145933 | 0.83[AFR][1000 genomes] |
| rs10146242 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104547 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104587 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2234512 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28780734 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4899218 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4899220 | 0.83[AFR][1000 genomes] |
| rs4902510 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57023353 | 0.83[AFR][1000 genomes] |
| rs7359109 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7765 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VTI1B | Proximal transcriptional regulation |
| ARG2 | Distal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| ATP6V1D | Distal transcriptional regulation |
| EIF2S1 | Distal transcriptional regulation |
| PIGH | Distal transcriptional regulation |
| RNA5SP386 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
| ENSG00000258466 | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| RPL35 | Distal transcriptional regulation |
| ENSG00000241542 | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
| SRSF5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014