SNP Report
Basic Infomation
| Name | rs2232570 dbSNP |
|---|---|
| Location | chr:12,48961981 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783256 | 1.00[CHB][hapmap] |
| rs11168576 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168628 | 0.86[ASN][1000 genomes] |
| rs11168629 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11168630 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11168631 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11168632 | 0.86[ASN][1000 genomes] |
| rs11168633 | 0.86[ASN][1000 genomes] |
| rs11168634 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11168635 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11168636 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs11168638 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11168639 | 0.86[ASN][1000 genomes] |
| rs11168640 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12230091 | 0.86[ASN][1000 genomes] |
| rs12230448 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs12230471 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs17237094 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs17237198 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs17834022 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs2468942 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2705123 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2705126 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2731073 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2731101 | 1.00[CHB][hapmap] |
| rs61995742 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LALBA | Proximal transcriptional regulation |
| LALBA | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014