SNP Report
Basic Infomation
| Name | rs2231884 dbSNP |
|---|---|
| Location | chr:11,65656564 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10791830 | 1.00[GIH][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10896050 | 0.81[CEU][hapmap] |
| rs11227333 | 0.85[EUR][1000 genomes] |
| rs1151519 | 0.85[EUR][1000 genomes] |
| rs1204650 | 0.85[EUR][1000 genomes] |
| rs12225345 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17854357 | 0.86[EUR][1000 genomes] |
| rs507062 | 0.83[EUR][1000 genomes] |
| rs568617 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs583887 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.84[EUR][1000 genomes] |
| rs585557 | 0.80[EUR][1000 genomes] |
| rs58568715 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs588114 | 0.83[EUR][1000 genomes] |
| rs596002 | 0.83[EUR][1000 genomes] |
| rs601863 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs608616 | 0.81[EUR][1000 genomes] |
| rs622614 | 1.00[GIH][hapmap];0.93[MEX][hapmap];0.80[EUR][1000 genomes] |
| rs641018 | 0.81[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs645900 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs656980 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs658524 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs658938 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs677931 | 0.85[EUR][1000 genomes] |
| rs687672 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs693824 | 0.85[EUR][1000 genomes] |
| rs694994 | 1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FIBP | Proximal transcriptional regulation |
| CCDC85B | Proximal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| SRSF7 | Distal transcriptional regulation |
| DPF2 | Distal transcriptional regulation |
| RELA | Distal transcriptional regulation |
| KAT5 | Distal transcriptional regulation |
| RNASEH2C | Distal transcriptional regulation |
| ENSG00000255120 | Distal transcriptional regulation |
| OVOL1 | Distal transcriptional regulation |
| ENSG00000255038 | Distal transcriptional regulation |
| PACS1 | Distal transcriptional regulation |
| SF3B2 | Distal transcriptional regulation |
| ENSG00000254458 | Distal transcriptional regulation |
| AP5B1 | Distal transcriptional regulation |
| CATSPER1 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| CTSW | Distal transcriptional regulation |
| C11orf68 | Distal transcriptional regulation |
| DRAP1 | Distal transcriptional regulation |
| SART1 | Distal transcriptional regulation |
| ENSG00000254762 | Distal transcriptional regulation |
| RAB1B | Distal transcriptional regulation |
| BANF1 | Distal transcriptional regulation |
| CST6 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014