SNP Report
Basic Infomation
| Name | rs2158027 dbSNP |
|---|---|
| Location | chr:11,61705207 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12787409 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12787928 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2158026 | 0.81[AMR][1000 genomes] |
| rs2521561 | 0.85[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs2521563 | 0.81[AMR][1000 genomes] |
| rs2521564 | 0.83[AMR][1000 genomes] |
| rs2521565 | 0.82[AMR][1000 genomes] |
| rs2521566 | 0.82[AMR][1000 genomes] |
| rs2524288 | 1.00[ASN][1000 genomes] |
| rs2524289 | 0.85[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs2736603 | 0.84[AMR][1000 genomes] |
| rs741887 | 0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs882169 | 0.83[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000200898 | Proximal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014