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rVarBase
SNP Report
Basic Infomation
Name
rs2075209  
dbSNP
Location
chr:2,65246123
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1060315
0.84[LWK][hapmap]
rs11126025
0.80[AFR][1000 genomes]
rs17029820
0.88[LWK][hapmap]
rs2540970
0.90[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC1A4
Distal transcriptional regulation
SLC1A4
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
C2orf86
SCAN