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rVarBase
SNP Report
Basic Infomation
Name
rs196002  
dbSNP
Location
chr:16,23963237
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs120908
0.96[CEU][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs189876
0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs196004
0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PRKCB
Distal transcriptional regulation
PRKCB
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
TNRC6A
SCAN
GPR139
SCAN