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rVarBase
SNP Report
Basic Infomation
Name
rs1885553  
dbSNP
Location
chr:10,81711711
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11201034
0.88[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12262739
0.81[LWK][hapmap]
rs1923536
0.97[ASN][1000 genomes]
rs2819121
0.81[ASN][1000 genomes]
rs7084667
1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SFTPD
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
RASGRP1
seeQTL
SFTPD
SCAN