SNP Report
Basic Infomation
| Name | rs1792954 dbSNP |
|---|---|
| Location | chr:11,61977063 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1622788 | 1.00[EUR][1000 genomes] |
| rs1675086 | 1.00[EUR][1000 genomes] |
| rs1675087 | 1.00[EUR][1000 genomes] |
| rs1792903 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1792910 | 1.00[EUR][1000 genomes] |
| rs1792911 | 1.00[EUR][1000 genomes] |
| rs1792912 | 1.00[EUR][1000 genomes] |
| rs1792933 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2232932 | 1.00[EUR][1000 genomes] |
| rs2266150 | 1.00[EUR][1000 genomes] |
| rs2463841 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2511350 | 1.00[EUR][1000 genomes] |
| rs3850950 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3867139 | 1.00[EUR][1000 genomes] |
| rs7950805 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014