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rVarBase
SNP Report
Basic Infomation
Name
rs1792872  
dbSNP
Location
chr:11,62006122
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1406385
0.80[AFR][1000 genomes]
rs1792873
1.00[ASW][hapmap];0.81[LWK][hapmap];0.88[MKK][hapmap];0.84[AFR][1000 genomes]
rs1792874
1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SCGB1D2
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)