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rVarBase
SNP Report
Basic Infomation
Name
rs17886253  
dbSNP
Location
chr:10,81320866
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1427817
0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17883188
0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17884208
0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1975006
0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1975008
0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SFTPA2
Proximal transcriptional regulation
SFTPA1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)