SNP Report
Basic Infomation
| Name | rs17828548 dbSNP |
|---|---|
| Location | chr:14,68867812 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10134240 | 1.00[CHB][hapmap] |
| rs10483809 | 1.00[CHB][hapmap];0.83[TSI][hapmap] |
| rs1274639 | 1.00[CHB][hapmap] |
| rs1314911 | 1.00[CHB][hapmap] |
| rs1314916 | 1.00[CHB][hapmap] |
| rs2025010 | 1.00[ASN][1000 genomes] |
| rs34422043 | 0.83[EUR][1000 genomes] |
| rs55792576 | 1.00[ASN][1000 genomes] |
| rs55794864 | 1.00[ASN][1000 genomes] |
| rs55820001 | 1.00[ASN][1000 genomes] |
| rs729138 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8009813 | 1.00[CHB][hapmap];0.83[TSI][hapmap] |
| rs8010233 | 1.00[CHB][hapmap];0.83[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| HLA-C | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014