SNP Report
Basic Infomation
| Name | rs17753548 dbSNP |
|---|---|
| Location | chr:2,65356154 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17702413 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17753309 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3771105 | 0.85[CEU][hapmap];0.90[GIH][hapmap] |
| rs56155626 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57359368 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60318458 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6546125 | 0.80[YRI][hapmap] |
| rs6721690 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6743675 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73936423 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73936427 | 0.88[AFR][1000 genomes] |
| rs7567660 | 1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7597073 | 0.85[CEU][hapmap];0.89[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204929 | Distal transcriptional regulation |
| ACTR2 | Distal transcriptional regulation |
| SLC1A4 | Distal transcriptional regulation |
| PSMD4 | Distal transcriptional regulation |
| CEP68 | Distal transcriptional regulation |
| RAB1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014