SNP Report

Basic Infomation

Name	rs17466150 dbSNP
Location	chr:12,40679254
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506149	0.88[YRI][hapmap]
rs10506153	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11564128	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11564175	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11564177	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11564203	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11564204	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11564205	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11564207	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564267	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11829088	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11834950	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1491936	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17443552	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17444096	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17444202	1.00[JPT][hapmap]
rs17461637	1.00[JPT][hapmap]
rs17465912	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17466339	0.93[AMR][1000 genomes]
rs17466430	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17491061	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17520251	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17520278	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1907632	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1907633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60776971	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61007767	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73275761	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000229899	Proximal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)