SNP Report
Basic Infomation
| Name | rs17445328 dbSNP |
|---|---|
| Location | chr:10,94305189 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736069 | 0.83[YRI][hapmap] |
| rs10786050 | 0.85[YRI][hapmap] |
| rs10882091 | 0.87[YRI][hapmap] |
| rs10882094 | 0.87[YRI][hapmap] |
| rs11187025 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11187027 | 0.86[ASN][1000 genomes] |
| rs11187031 | 0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11187032 | 0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11187040 | 0.86[ASN][1000 genomes] |
| rs11187064 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11187065 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11187067 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11187069 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11187070 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11187073 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12776190 | 0.88[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17445028 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs35120790 | 0.83[AMR][1000 genomes] |
| rs35418143 | 0.84[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35616984 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4646953 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6583830 | 0.87[YRI][hapmap] |
| rs72811205 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7900689 | 0.87[YRI][hapmap] |
| rs7914814 | 0.87[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IDE | Proximal transcriptional regulation |
| IDE | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014