SNP Report
Basic Infomation
| Name | rs17444709 dbSNP |
|---|---|
| Location | chr:12,40805830 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1122621 | 1.00[JPT][hapmap] |
| rs1122863 | 1.00[JPT][hapmap] |
| rs11564109 | 1.00[JPT][hapmap] |
| rs11835808 | 1.00[JPT][hapmap] |
| rs1427262 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1492329 | 1.00[JPT][hapmap] |
| rs17128391 | 1.00[JPT][hapmap] |
| rs17128401 | 1.00[JPT][hapmap] |
| rs17529964 | 1.00[JPT][hapmap] |
| rs17533153 | 1.00[JPT][hapmap] |
| rs17589334 | 1.00[JPT][hapmap] |
| rs17599001 | 1.00[JPT][hapmap] |
| rs17599042 | 1.00[JPT][hapmap] |
| rs17599666 | 1.00[JPT][hapmap] |
| rs17600388 | 1.00[JPT][hapmap] |
| rs2404834 | 0.83[CEU][hapmap] |
| rs33962975 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4767983 | 1.00[JPT][hapmap] |
| rs4768291 | 1.00[JPT][hapmap] |
| rs7309042 | 1.00[JPT][hapmap] |
| rs73094979 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7315186 | 1.00[JPT][hapmap] |
| rs7959536 | 1.00[JPT][hapmap] |
| rs7960976 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258167 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014