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rVarBase
SNP Report
Basic Infomation
Name
rs1742981  
dbSNP
Location
chr:20,31042348
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1029116
0.85[MEX][hapmap]
rs1040751
0.82[EUR][1000 genomes]
rs1737889
0.82[EUR][1000 genomes]
rs910888
0.81[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000236772
Distal transcriptional regulation
C20orf112
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
C20orf186
SCAN
BCL2L1
SCAN
FECH
SCAN
DUSP15
SCAN
EDEM2
SCAN