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rVarBase
SNP Report
Basic Infomation
Name
rs17249049  
dbSNP
Location
chr:14,67934391
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12589622
1.00[LWK][hapmap]
rs12589836
1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs17191694
1.00[LWK][hapmap]
rs17249111
1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[AMR][1000 genomes]
rs3742865
1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
TMEM229B
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
SNORA57
seeQTL