SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 6)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs17185574	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17633020	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1800008	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2019413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71477602	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71490344	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
BEST1	Proximal transcriptional regulation
ENSG00000269089	Proximal transcriptional regulation
PHTF1	Distal transcriptional regulation
ASH1L	Distal transcriptional regulation
CPNE8	Distal transcriptional regulation
UBC	Distal transcriptional regulation
ENSG00000258017	Distal transcriptional regulation
TUBA1B	Distal transcriptional regulation
CTC1	Distal transcriptional regulation
LIFR	Distal transcriptional regulation
LIFR-AS1	Distal transcriptional regulation
FADS1	Distal transcriptional regulation
FADS3	Distal transcriptional regulation
RAB3IL1	Distal transcriptional regulation
ENSG00000255553	Distal transcriptional regulation
ENSG00000236607	Distal transcriptional regulation
ENSG00000244176	Distal transcriptional regulation
ENSG00000256914	Distal transcriptional regulation
MIR1908	Distal transcriptional regulation
ENSG00000266411	Distal transcriptional regulation
VMP1	Distal transcriptional regulation
APRT	Distal transcriptional regulation
POLDIP3	Distal transcriptional regulation
ENSG00000270022	Distal transcriptional regulation
MIR611	Distal transcriptional regulation
TMEM258	Distal transcriptional regulation
FEN1	Distal transcriptional regulation
FADS2	Distal transcriptional regulation
TAF1D	Distal transcriptional regulation
C11orf54	Distal transcriptional regulation
HIST1H2BD	Distal transcriptional regulation
PARD6B	Distal transcriptional regulation
BEST1	RNA binding protein mediated regulation
FTH1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)