SNP Report
Basic Infomation
| Name | rs17165741 dbSNP |
|---|---|
| Location | chr:5,131530411 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17132283 | 0.91[JPT][hapmap] |
| rs17165720 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17165721 | 1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17165762 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3805685 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57804924 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61566312 | 1.00[EUR][1000 genomes] |
| rs6872588 | 1.00[EUR][1000 genomes] |
| rs73257850 | 1.00[EUR][1000 genomes] |
| rs73259816 | 1.00[EUR][1000 genomes] |
| rs73259833 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73259835 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73259847 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73259854 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73259858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73259864 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73261838 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73261861 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000224431 | Proximal transcriptional regulation |
| ENSG00000248721 | Proximal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| ENSG00000224431 | Distal transcriptional regulation |
| ENSG00000224015 | Distal transcriptional regulation |
| ENSG00000253067 | Distal transcriptional regulation |
| RNA5SP192 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CSF2RB | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014