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rVarBase
SNP Report
Basic Infomation
Name
rs17111309  
dbSNP
Location
chr:5,150106724
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10067102
1.00[CEU][hapmap]
rs17111334
1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278028
0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278093
0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278097
0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796423
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796443
0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7705571
0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
DCTN4
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)