SNP Report
Basic Infomation
| Name | rs17105667 dbSNP |
|---|---|
| Location | chr:14,68926327 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11849916 | 1.00[YRI][hapmap] |
| rs17105456 | 1.00[AMR][1000 genomes] |
| rs17105630 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17105669 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2107339 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34574981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35474337 | 1.00[AMR][1000 genomes] |
| rs3784121 | 1.00[YRI][hapmap] |
| rs57806531 | 1.00[AMR][1000 genomes] |
| rs58650874 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58925277 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60012660 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60443209 | 1.00[AMR][1000 genomes] |
| rs61064711 | 1.00[AMR][1000 genomes] |
| rs73278308 | 1.00[AMR][1000 genomes] |
| rs73278318 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278333 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278338 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278340 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278350 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278352 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278369 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278374 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278375 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
| ENSG00000259038 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014