SNP Report
Basic Infomation
| Name | rs16847502 dbSNP |
|---|---|
| Location | chr:1,200967742 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10505675 | 1.00[ASW][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10920096 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10920098 | 1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12059217 | 0.86[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12067926 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12069891 | 0.82[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12089839 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12122721 | 1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12126806 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12402964 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12403728 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12407188 | 0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs2271144 | 0.85[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2297907 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2297910 | 0.86[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3738254 | 1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs55800004 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56005505 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56112709 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs56411829 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs58766959 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60858775 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61464909 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61740477 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61740482 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs74138809 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74138810 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74138811 | 0.95[ASN][1000 genomes] |
| rs885027 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF21B | Distal transcriptional regulation |
| KIF21B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014