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rVarBase
SNP Report
Basic Infomation
Name
rs16837058  
dbSNP
Location
chr:1,155799623
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs13376498
1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836971
1.00[AMR][1000 genomes]
rs57468684
1.00[AMR][1000 genomes]
rs59287240
1.00[AMR][1000 genomes]
rs61375216
1.00[AMR][1000 genomes]
rs6663016
0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6699393
0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548199
1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550827
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
RIT1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)