SNP Report
Basic Infomation
| Name | rs162901 dbSNP |
|---|---|
| Location | chr:5,131620366 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515456 | 0.83[CEU][hapmap] |
| rs10900805 | 1.00[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.93[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs156110 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3792881 | 0.83[CEU][hapmap] |
| rs3792884 | 0.83[CEU][hapmap] |
| rs3852207 | 0.87[EUR][1000 genomes] |
| rs57560761 | 0.87[EUR][1000 genomes] |
| rs57744805 | 0.87[EUR][1000 genomes] |
| rs60957893 | 0.82[EUR][1000 genomes] |
| rs61119904 | 0.87[EUR][1000 genomes] |
| rs667838 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6868229 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7447266 | 0.87[EUR][1000 genomes] |
| rs7722713 | 1.00[CEU][hapmap];0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A4 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| CSF2 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014