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rVarBase
SNP Report
Basic Infomation
Name
rs151772  
dbSNP
Location
chr:16,11337863
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs149311
1.00[ASW][hapmap]
rs72771850
0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SOCS1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
HSPG2
SCAN
LOC642755
Pritchard
DEXI
Pritchard
TXNDC11
SCAN
TNFRSF17
SCAN