SNP Report
Basic Infomation
| Name | rs1517352 dbSNP |
|---|---|
| Location | chr:2,191931464 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10931481 | 0.91[CHB][hapmap] |
| rs11693480 | 0.81[CEU][hapmap] |
| rs12463658 | 0.85[CEU][hapmap];0.82[CHB][hapmap] |
| rs13017460 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16833249 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs1818625 | 0.81[ASN][1000 genomes] |
| rs3024847 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3024861 | 1.00[ASW][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs3024866 | 1.00[ASW][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs34946552 | 0.85[EUR][1000 genomes] |
| rs4853457 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6736175 | 0.83[AFR][1000 genomes] |
| rs72913156 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STAT4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| EPO | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014